to Yu-Yen Ou's Homepage
Dept. of Computer Science and Engineering,
Yuan Ze University (No. 135 Yuan-Tung Road, Chungli),
Taoyuan, Taiwan, 320
Tel: (886) 3-463-8800 x 2185
Fax: (886) 3-463-8850
firstname.lastname@example.org or email@example.com
I am now an assistant professor in the Department of Computer Science and Engineering, Yuan-Ze University, Taiwan.
My fields of professional interest are Bioinformatics, Machine Learning and Data Mining.
Yu-Yen Ou*, Shu-An Chen, Sheng-Cheng Wu, "ETMB-RBF: Discrimination of metal-binding sites in electron transporters based on RBF Networks with PSSM profiles and significant amino acid pairs,"
Accepted by PLoS ONE, 2012.
Yu-Yen Ou*, "Predicting Protein Metal Binding Sites with RBF Networks based on PSSM Profiles and Additional Properties,"
Current Bioinformatics, 2012.
Shu-An Chen, Yu-Yen Ou*, Tzong-Yi Lee, M.Michael Gromiha*, "Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties," Bioinformatics, 27(15):2062-7, 2011.
Tzong-Yi Lee, Shu-An Chen, Hsin-Yi Hung and Yu-Yen Ou*, "Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites," PLoS ONE, 2011.
Shu-An Chen, Tzong-Yi Lee, and Yu-Yen Ou*, "Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins," BMC Bioinformatics. 11:536. 2010.
Yu-Yen Ou, Shu-An Chen, M.Michael Gromiha, "Classification of transporters using efficient radial basis function networks with position-specific scoring matrices and biochemical properties," PROTEINS: Structure, Function, and Bioinformatics. 2010.
Yu-Yen Ou, Shu-An Chen, M.Michael Gromiha, "Prediction of Membrane Spanning Segments and Topology in beta-barrel Membrane Proteins at Better Accuracy," Journal of Computational Chemistry. Volume 31 Issue 1, Pages 217 - 223. 2010.
Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, Meng-Han Yang, Chien-Yu Chen and Yen-Jen Oyang, "Prediction of protein secondary structures with a novel kernel density estimation based classifier", BMC Research Notes, 1:51, 2008.
Yu-Yen Ou, M.Michael Gromiha, Shu-An Chen, and Makiko Suwa, "TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles," Computational Biology and Chemistry, Volume 32, Issue 3, Pages 227-231, 2008
Yu-Yen Ou, Shu-An Chen, Chung-Lu Shao, and Hao-Geng Hung, "Using Efficient RBF Network to Identify Interface Residues Based on PSSM Profiles and Biochemical Properties," Lecture Notes in Bioinformatics, 4774, 2007
Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Yen Ou, Yen-Jen Oyang, "Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction," Lecture Notes in Bioinformatics, 4414, pp. 395-409, 2007
Chung-Tsai Su, Chien-Yu Chen, and Yu-Yen Ou, "Protein disorder prediction by condensed PSSM considering propensity for order or disorder," BMC Bioinformatics, 7, pp. 319, 2006
Yu-Yen Ou, Guan-Hau Chen, and Yen-Jen Oyang, "Expediting Model Selection for Support Vector Machines Based on an Advanced Data Reduction Algorithm, "Lecture Notes in Artificial Intelligence, 4099, pp. 1017-1021, 2006
- Yen-Jen Oyang, Shien-Ching Hwang, Yu-Yen Ou, Chien-Yu
Chen, and Zhi-Wei Chen, Data Classification with the Radial Basis Function
Network Based on a Novel Kernel Density Estimation Algorithm,
IEEE Transactions on Neural Networks, pp. 225-236, 2005.[pdf]
- Assistant Professor, Department of Computer Science and Engineering, Yuan Ze University, August 2005--present.
- Chairman, IEEE National Taiwan University Student Branch, July 2004--July 2005.
- Full-Time TA, 217 Lab., Department of Computer Science and Information Engineering , National Taiwan University, August 2003--July 2004.
System Administrator, Taipei Educational Network Center
August 1999--July 2000.
Military Service, The Army of Taiwan,
September 1997--July 1999.
Teacher, Yong-Ji Primary School
August 1996--August 1997.
Best Paper Award, 6th International Conference on Intelligent Computing (ICIC2010), 2010.
Best Paper Award, International Conference of Digital Content, 2009.
- Outstanding Alumni Award, Taipei Municipal University of Education, 2007.
- Member, Phi Tau Phi Scholastic Honor Society, 2005.
- Outstanding Leadership and Service Award, Institute of Electrical and Electronics Engineers (IEEE), 2005.
- First Place, Group 2, Program Contest of Ministry of Education, 1995.
- Honorable Mention, Group 2, Program Contest of Ministry of Education, 1994.